With his former partner Beverley Allen, Horner has a daughter, born in October 2013. Horner and former Spice Girls member Geri Halliwell announced their engagement on 11 November 2014, and were married on 15 May 2015 in Woburn, Bedfordshire. On 10 October 2016, Halliwell announced the pair were expecting their first child together, their son was born in January 2017. Horner is stepfather to Halliwell's daughter, Bluebell Madonna, from her previous relationship with screenwriter Sacha Gervasi. Horner is an avid Coventry City F.C. supporter.
Horner was appointed Officer of the Order of the British Empire (OBE) in the 2013 Birthday Honours for services to motorsport.