On 2 March 2016, and after a 1–0 loss away to Stoke City, he was involved in a confrontation with Newcastle supporters. Intending to applaud the travelling supporters, but met with anger instead; he had to be turned away by Jamaal Lascelles. On 9 April, Janmaat was substituted in the first half of a 3–1 loss away to Southampton, having sustained a groin injury. In his frustration, he punched a wall and broke two of his fingers, missing the next four matches for Newcastle. Vurnon Anita replaced him in his absence, and as a result, reports linked him away from the club. He returned to the squad for the penultimate match of the season against Aston Villa, but was not brought on. He was named in the final match of the season against Tottenham Hotspur. By this time, the club were already relegated, but managed to beat Tottenham 5–1, with Janmaat assisting the fourth goal and scoring the fifth goal. A picture of a Newcastle supporter giving Janmaat a reversed two-fingered salute, as the Dutchman wheeled away celebrating his goal was widely circulated on social media.
On 24 August 2016, following Newcastle's relegation to the Championship, Janmaat signed for Premier League Watford for a fee of £7.5 million. On 12 October 2020, Watford confirmed that agreement with Janmaat was reached for Janmaat to leave on a free transfer.