In the 2006 season, Jones rushed for 1,168 yards and scored six touchdowns on 154 carries, thus averaging 8.7 yards per carry. He was also an all-American kickoff returner and had one touchdown on a 100-yard kickoff return against Ole Miss, and caught 15 passes for 107 yards and three touchdowns. Jones alongside McFadden and Peyton Hillis, it was the first time in University of Arkansas history that two different running backs rushed for more than 1,000 yards in the same season. Jones was a second-team All-SEC by the conference's coaches, and second-team All-SEC by the media. That team finished 10-4 and won the SEC Western Division title.