Haise flew as the lunar module pilot on the aborted Apollo 13 lunar mission in 1970. Due to the distance between the Earth and Moon during the mission, Haise, Jim Lovell, and Jack Swigert hold the record for the farthest distance from the Earth ever traveled by human beings. During this flight Haise developed a urinary tract infection and later kidney infections. These caused him to be in pain for most of the trip.
Haise remained in the astronaut rotation and served as the backup mission Commander for Apollo 16. Though there was no formal selection, Haise was prospectively slated to command Apollo 19 with William R. Pogue as command module pilot and Gerald P. Carr as lunar module pilot. However, the mission was canceled in late 1970 due to budget cuts.
Haise's other awards include the American Institute of Aeronautics and Astronautics (AIAA) Haley Astronautics Award for 1971; the American Astronautical Society Flight Achievement Awards for 1970 and 1977; the City of New York Gold Medal in 1970; the City of Houston Medal for Valor in 1970; the Jeff Davis Award (1970); the Mississippi Distinguished Civilian Service Medal (1970); the American Defense Ribbon; the SETP's Ray E. Tenhoff Award for 1966; the A. B. Honts Trophy as the outstanding graduate of Class 64A from the Aerospace Research Pilot School in 1964; an honorary doctor of science degree from Western Michigan University (1970); the JSC Special Achievement Award (1978); the Soaring Society of America's Certificate of Achievement Award (1978); the General Thomas D. White USAF Space Trophy for 1977; the SETP's Iven C. Kincheloe Award (1978); and the Air Force Association's David C. Schilling Award (1978).