His feature film directorial debut, The Muppets, a musical-comedy film written by Jason Segel and Nicholas Stoller, was released in 2011 and became a critical and commercial hit and won an Oscar for Best Original Song. The film earned him his second BAFTA nomination at the 66th British Academy Film Awards. He wrote (with Nicholas Stoller) and directed a follow-up, Muppets Most Wanted, which was released in 2014. Bobin next directed the sequel Alice Through the Looking Glass (2016). In February 2016, it was announced that he would direct a Jump Street-Men in Black crossover film, however plans for the movie fell through.
In 2011, Bobin's first feature film, The Muppets, won an Oscar for Best Original Song for the song "Man or Muppet" written by Bret McKenzie. Bobin himself was nominated for the BAFTA Award for Outstanding Debut by a British Writer, Director or Producer.