On 20 January 2013, Fischer played in his first Klassieker match against arch-rivals Feyenoord from Rotterdam, starting on the Left wing, he earned himself the Man of the Match award after scoring the first two goals in the first half of the match. His first goal in the 7th minute saw Fischer attacking from the left, and dribbling past the last defender and the keeper to score on the empty goal, while his second goal in the 40th minute came from the right side of the box, after he stripped the ball from Feyenoord defender Joris Mathijsen and volleyed it into the back of the net, Ajax went into halftime up by two goals. He was substituted in the 61st minute for Ryan Babel, with the match ending 3–0 for the Amsterdam side, in what would be the club's 50th all time victory over Feyenoord at home in Eredivisie history.
On 18 February 2013, it was announced by Frank de Boer in De Telegraaf, that Viktor Fischer had extended his contract with Ajax until 2017.
On 5 May 2013, Fischer contributed a goal in the 68th minute to a 5–0 victory at home against Willem II, which secured the top position in the Eredivisie table, and thus the club's third consecutive national title and 32nd overall. Later that same day, Fischer was announced as AFC Ajax Talent of the Year for his outstanding debut season, during which he emerged as Frank de Boer's first choice on the left wing and which saw him find the back of the net ten times, scoring twelve goals in all competitions all together.
The 2013–14 season began with Fischer scoring his first goal in a pre-season friendly match against De Graafschap on 13 July 2013 with the match ending a 3–0 win for Ajax in Doetinchem. The season officially kicked off on 27 July 2013 with the Dutch Super Cup (Johan Cruijff Shield) which would see Dutch Cup winners AZ face-off against league champions Ajax at the Amsterdam ArenA. Fischer played the full match on the left wing, as Ajax defeated AZ 3–2 after extra time, earning the 8th overall Dutch Super Cup trophy for the club. He scored his first Eredivisie goal for Ajax in the season opener against Roda JC Kerkrade scoring the final goal in the 83' minute, in the 3–0 win in Amsterdam.